• Species
    • * Species with available genome assembly
    • European Vitis Species
    • Vitis vinifera ssp. sylvestris
    • Vitis vinifera ssp. vinifera
    • North America Vitis Species
    • Vitis acerifolia
    • Vitis aestivalis
    • Vitis arizonica
    • Vitis berlandieri
    • Vitis californica
    • Vitis cinerea
    • Vitis girdiana
    • Vitis labrusca
    • Vitis monticola
    • Vitis palmata
    • Vitis riparia
    • Vitis rotundifolia
    • Vitis rupestris
    • Vitis tiliifolia
    • Vitis vulpina
    • Vitis x champinii
    • Vitis x doaniana
    • Vitis x novae-angliae
    • Vitis x slavinii
    • East Asia Vitis Species
    • Vitis adenoclada
    • Vitis amurensis
    • Vitis balansana
    • Vitis bashanica
    • Vitis bellula
    • Vitis betulifolia
    • Vitis chunganensis
    • Vitis chungii
    • Vitis coignetiae
    • Vitis davidii
    • Vitis erythrophylla
    • Vitis ficifolia
    • Vitis flexuosa
    • Vitis hancockii
    • Vitis heyneana
    • Vitis lanceolatifoliosa
    • Vitis piasezkii
    • Vitis pseudoreticulata
    • Vitis quinquangularis
    • Vitis retordii
    • Vitis romanetii
    • Vitis shenxiensis
    • Vitis tsoi
    • Vitis wuhanensis
    • Vitis yenshanensis
    • Vitis yunnanensis
    • Other Genus
    • Ampelopsis glandulosa
    • Cayratia japonica
    • Parthenocissus tricuspidata
    • Interspecific Hybrid
    • Vitis interspecific crossing
    • Unknown
    • Unknown species
  • Germplasm
  • Phenotype
  • Gene
  • Tools
    • BLAST
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    • Submit Data
    • View Genetic Maps
    • Synteny Visualization
    • Search Publications
    • External links & tools
  • Help
    • About VitisGDB
    • User Manual
    • Contact
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  • Gene expression3
  • Multi-omics1
  • RNA-seq3
  • Germplasm6
  • Microsatellite2
  • Genome3

Database: Grape eFP Browser

Feature: It is an “Electronic Fluorescent Pictograph” browser of expression patterns based on data from Fasoli et al. (2012) The Grapevine Expression Atlas Reveals a Deep Transcriptome Shift Driving the Entire Plant into a Maturation Program.

Database: VTCdb

Feature: If offers an online platform for grapevine transcriptional regulatory inference for the cultivated grapevine and provides users to query gene(s), modules or biological processes of interests in several ways.

Database: Vespucci

Feature: It a web based interface for exploring and analyzing complex gene expression patterns across all available public expression data of Vitis vinifera.

Database: VitisNet

Feature: It offers access to Celldesigner and Cytoscape files of grapevine.

Database: grape_sRNA_atlas

Feature: It allows to browse and query grape miRNA-target (gene) networks.

Database: BIOWINE

Feature: It provides easy access to RNA-seq data (transcripts and short non-coding RNA) from two of the main grapevine cultivars in Sicily (Nero d’Avola and Nerello Mascalese) under different conditions, and allows for computational analysis on them.

Database: Grape-Transcriptome

Feature: It is a expression database of the grape world and aims to collect, store, treatment and share the Transcriptome data of the vitis genus.

Database: Armenian Vitis Database

Feature: It is a public information source, including molecular and ampelographic characterization of Armenian grape germplasm.

Database: The European Vitis Database

Feature: It contains genetic resources of European grapes

Database: French Plant Grape Database

Feature: It is catalogue of vines grown in France

Database: French Network of Grapevine Repositories (RFCV)

Feature: It includes 36 regional partners involved in the preservation of grapevine genetic resources and selection. More than 180 repositories are distributed over all the grape producing regions in France.

Database: Italian Vitis Database

Feature: It includes characterisation of grapevine varieties at Italian regional and national level

Database: Vitis International Variety Catalogue (VIVC)

Feature: It is an encyclopedic database with around 23000 cultivars, breeding lines and Vitis species, existing in grapevine repositories and/or described in bibliography and contains cultivar specific passport data, SSR-marker data, comprehensive bibliography and photos.

Database: Swiss Vitis Microsatellite Database (SVMD) 

Feature: It is a standardised database of microsatellite genotypes of virtually all grape cultivars, rootstocks or wild grapevines that grow in Switzerland and contains data of about 170 Vitis individuals at the six microsatellite markers (VVMD5, VVMD7, VVMD27, VVS2, VrZAG62 and VrZAG79) chosen as a core set by the international grape genetics community (This et al. 2004, Theor Appl Genet 109(7):1448-1458).

Database: Grape Microsatellite Collection (GMC)

Feature: It is a web-backed database of genotypes at SSR loci obtained from IASMA analysis and literature.

Database: URGI (Vitis)

Feature: It includes PN0024 12x genome assembly, illumina 20k resequencing data and some basic analysis tools such as blast and genome browse.

Database: Grape Genome Database

Feature: It allows to browse and blast agianst PN0024 12x and query genes in the V2 gene annotaion results.

Database: Cantu Lab at UC Davis

Feature: It allows to download, browse and online blast genome assembly of 4 cultivated grape cultivars: Cabernet Sauvignon, Chardonnay, Carménère, and Zinfandel.

Wei Chen | Yang Dong

Copyright © 2020.

State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming 650201, China